PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16165
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 1074aa    MW: 119383 Da    PI: 6.0934
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16165genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20132224190
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
               f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F +   s +
  EMT16165 132 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFVRA--SPT 224
               99******************************9999986.************************************************943..333 PP

2Auxin_resp86.74.5e-292202861883
  Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 ras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
    EMT16165 220 RASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 286
                 899***************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-36121226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-33124226IPR015300DNA-binding pseudobarrel domain
CDDcd100175.43E-18131228No hitNo description
PfamPF023622.2E-18132224IPR003340B3 DNA binding domain
SMARTSM010191.7E-18132233IPR003340B3 DNA binding domain
PROSITE profilePS5086310.673132234IPR003340B3 DNA binding domain
PfamPF065072.3E-24220286IPR010525Auxin response factor
PfamPF023094.1E-89381026IPR033389AUX/IAA domain
PROSITE profilePS5174526.9479411025IPR000270PB1 domain
SuperFamilySSF542772.65E-69551020No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA  60
SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL  120
ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN  180
VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR ASPTEFVIPF AKYQKAMYSN  240
QISLGMRFRM MCETEELGTR RYMGTITGIS DLDPVRWKNS QWRSLQVGWD ESAAGERRNR  300
VSIWEIEPLA APFFICPQPF FGVKRPRQLD DESLEMESLM KRAMPWLGEE ICIKDPQTQS  360
ATMPGLSLVQ WMNMNRQQSS SLASTAMQSE YLRSASNPAM QNIGAADLAR QLYMQNHLLQ  420
QNSMQFNPPK LHQQMKPIND LSNAALPLNQ LGAIRNHQDQ KQDQQRQQQS GIQAIPLSQA  480
QAQTNIVQAQ VILQNQMQQQ QQQKQPPPSP TQNQHGASGQ HLLQSHQLQD QNLQMQQQQL  540
LLHQQLQQQQ QLNKLPGQLA NLASQQTQLS DQELHLQLLQ KLQQQSLMSQ SAVTLSRLPI  600
IQEQQNFLVD MQQQLSNSHS LAQQQVMPQQ DCRTSSSQTT QLPPPIQQEQ QQQKPSQKQV  660
APTYVSEAAF AQISSTSVIP KTGNSMIVPG AAQSAVTEEI PSCSTSPSTA NGNHLVQPTI  720
GRNDHCKIST EKVPHSIAQM SILTPIEAVS VTPVTTKELP KLNNGVKSSA ITSKLPNVVS  780
GLQNFMNNAL PTDNLETASS ATSLWPSQTD GLLHQGFATS NFNQHQMFKD ELPDVEIQGV  840
DPSNSALFGM NNDGPLGFPM ETEGLLENAL DSVKYQNHFS TDDENNYQMQ KDARQEISTS  900
MVSQSFGQSD MAFNSIDSAI NDGALMNRSS WPPAAPPQRM RTFTKVYKRG AVGRSIDIGR  960
FSGYGELNQA LARMFGIEGQ LEDRQRIGWK LVYTDHEDDV LLLGDDPWEE FVNCVKCIRI  1020
LSPQEVQKMS LDGDLGSNVL PNQACSSSDG GNTWKPRYEQ NSGNPSIGPY DQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1211830745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570905.10.0PREDICTED: auxin response factor 5-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLN1QYK10.0N1QYK1_AEGTA; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.21e-163ARF family protein